Jay Shenoy

I am a computer science PhD student at Stanford University advised by Prof. Gordon Wetzstein. My research is focused on improving the capabilities of foundation models like AlphaFold to reconstruct protein dynamics from experimental cryo-electron microscopy and X-ray crystallography data. In the past, I have worked on developing computer vision techniques to solve inverse problems in scientific imaging.

Please reach out if you are interested in collaborating or have any questions about my work!

Fine-tuning Boltz-2 directly on cryo-EM map ensembles.

Diffusion guidance of Boltz-2 with X-ray crystallography data.

Online protein reconstruction from X-ray single particle imaging.

Retina tracking and mapping in 2D and 3D.

Searching car-mounted image datasets using a domain-specific language.

State-of-the-art eye tracking and mapping at the cellular scale.

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